We strive to understand fundamental relationships between function and structure in living tissues, primarily neural tissue and extracellular matrix (ECM). Specifically, we are interested in how microstructure, hierarchical organization, composition, and material properties all affect biological function and dysfunction. We investigate biological and physical model systems, such as, “engineered” tissue constructs, and tissue analogs, at different time and length scales. These physical measurements are guided by mathematical and computational models we develop to 1) aid in the design of experiments, 2) interpret their findings, 3) make new predictions and 4) generate new hypotheses. Primarily, we use water molecules to probe both equilibrium and dynamic interactions among tissue constituents over a wide range of time and length scales. At macroscopic length scales we vary water content or ionic composition to determine the equilibrium osmo-mechanical properties of well-defined model systems. To probe tissue microstructure and microdynamics, we employ atomic force microscopy (AFM), small-angle X-ray scattering (SAXS), small-angle neutron scattering (SANS), static light scattering (SLS), dynamic light scattering (DLS), and one-dimensional and multi-dimensional nuclear magnetic resonance (NMR) relaxometry and diffusometry. We also develop and use physics and engineering principles to understand how observed changes in tissue microstructure and physical properties affect the transport of mass, charge, momentum, and magnetization. The most direct noninvasive method for characterizing these essential transport processes in tissues in vivo is via magnetic resonance imaging (MRI), which we use to follow microstructural and architectural changes in development, degeneration, aging, and trauma. One goal of our basic tissue sciences research is to translate our novel quantitative methodologies and the understanding we glean from them from "bench to bedside."
Our tissue sciences activities above dovetail with our basic and applied research in quantitative imaging, which is intended to generate in vivo measurements and maps of intrinsic physical quantities, such as magnetization, diffusivity, relaxivity, and exchange rates, rather than qualitative images widely used in clinical radiology. Our quantitative imaging group uses knowledge of physics, engineering, applied mathematics, imaging, and computer sciences, and insights gleaned from our tissue sciences research, to discover and develop novel imaging "stains" and "contrasts" that can sensitively and specifically detect changes in tissue composition, microstructure, or microdynamics. Our ultimate goal is to use these new parameters as quantitative imaging biomarkers to assess normal and abnormal development, diagnose childhood diseases and disorders, and characterize degeneration and trauma. MRI is our in vivo imaging method of choice because it is well suited to many NICHD mission-critical applications, as it is non-invasive, non-ionizing, generally requires no exogenous contrast agents or dyes, and is deemed safe for use with pregnant mothers and their developing fetuses, and with children in both clinical and research settings. One technical objective has been to transform clinical MRI scanners into quantitative scientific instruments capable of producing reproducible, accurate, and precise imaging data to measure and map useful imaging biomarkers for pre-clinical and clinical applications, including single scans, longitudinal, and multi-center studies, personalized medicine, and for populating imaging databases with high-quality normative data.
SQITS News
SQITS partners with the Uniformed Services University's Neuropathology core to form the Neuropathology-Neuroradiology Integration Core.
Carnegie Mellon University College of Engineering News: "Teddy Cai Wins Prestigious Scholarship" (March 29, 2019)
Video (Zilkha Seminar Series, Keck School of Medicine of USC): “Probing Tissue Structure and Dynamics using MRI” (March 13, 2019)
Video (George Mason University Bioengineering Seminar Series): “What can we learn about nervous system structure and function using porous media MR?” (February 28, 2019)
Video (Johns Hopkins University webcast): “Characterizing brain microstructure, architecture and organization with diffusion MRI” (February 4, 2014)
Article on study conducted in collaboration with the Fields lab: Astrocytes Regulate Signal Speeds of Neurons. (Neuroscience News, October 29, 2018)
Press Release: Neurons absorb and release water when firing, NIH study suggests. (September 13, 2018)
Video (NIH Videocast): NICHD Advisory Council Meeting - September 2018 (Dr. Basser is featured at 2:39:19)
Drs. Basser and Tasaki featured in: Fox, D. (2018). Brain Cells Communicate with Mechanical Pulses, Not Electric Signals. Scientific American, (Volume 318, Issue 4), pp.61-67.
Video (YouTube): Dr. Basser featured in "The Human Placenta Project" (for more information about the Human Placenta Project, click here)
Video (YouTube): Dr. Basser featured in "Research for a Lifetime: The Journey Forward" to commemorate NICHD's 50th anniversary
BRAIN Initiative: Bridging Gaps in Neuro Knowledge (NIH Catalyst, Volume 25 Issue 6, November–December 2017)
Video (NIH Videocast): "Measuring the latency connectome" (34:00) – Plenary talk, 2017 NIH Research Festival (September 13, 2017)
Medical imaging device developed by NIH researchers awarded U.S. patent (May 19, 2017)
Video (YouTube): "The Invention and Development of Diffusion Tensor NMR and MRI at the NIH", recorded at a conference hosted by Cardiff University Brain Research Imaging Centre (CUBRIC), January 31 – February 1, 2017
Dr. Derek Jones, Former NIH Mentee, Directs Brain Imaging Center in Wales (NIH Record, July 1, 2016)
Trainee Chinedu Anyaeji selected to participate in the NICHD Scholars Program (The Catalyst, Volume 19, Issue 6, November-December 2011)
"Twitchy Nerves (Literally) May Explain Epilepsy, Pain" on NPR's Morning Edition (October 5, 2010)
Awards:
Dr. Peter Basser is inducted to the National Academy of Engineering, 2020 "For development of diffusion tensor MRI and streamline tractography, transforming the characterization of brain disorders and visualization of nerve fiber pathways."
Dr. Peter Basser is awarded the 2019 Honorary Member Award by the American Society of Neuroradiology
From the Deputy Director of Intramural Research's website (screencapture):
Peter Basser, Ph.D., head of the NICHD Section on Quantitative Imaging and Tissue Sciences, has been made an honorary member of the American Society of Neuroradiology, an organization of more than 5,600 neuroradiologists and related professionals.
Basser is a scientist-inventor whose work has transformed how neurological disorders and diseases are diagnosed and treated, and how brain architecture, organization, structure, and anatomical “connectivity” are studied and visualized. He is the principal inventor of Diffusion Tensor Magnetic Resonance Imaging (DTI), a non-invasive MRI technology that yields a family of novel features and imaging biomarkers. Quantities that he proposed include the mean apparent diffusion coefficient (mADC) — a DTI-derived parameter widely used to follow changes in stroke and in cancers, and the fractional anisotropy (FA), a robust quantity that makes brain white matter visible. He also proposed and developed “Streamline Tractography,” a means to elaborate white matter pathways, which now helps neuroradiologists plan brain surgeries. More recently, Basser has been a pioneer in the field of “Microstructure Imaging,” which uses MRI data and models of water diffusion in tissue to extract salient micron-scale morphological features. Examples of MRI methods that Basser invented and developed with colleagues include the non-invasive measurement of the mean axon diameter (CHARMED), the axon diameter distribution (AxCaliber), and the mean apparent propagator (MAP) in each voxel. He and members of his lab have also been actively involved in developing multiple pulsed-field gradient (mPFG) methods to measure microscopic diffusion anisotropy, which they reported observing in gray matter as early as 2007. Within the past few years, Basser’s lab has continued to make seminal contributions to neuroradiology, inventing and developing MRI methods to measure and map joint relaxation and diffusion spectra in brain tissue.
Dr. Peter Basser was inducted into the American Institute for Medical and Biological Engineering (AIMBE) College of Fellows (link to text alternative) for his seminal contributions to the invention, development, and translation of diffusion tensor MRI (DTI), DTI tractography, and several neuro-technologies. (click below image to enlarge).
- Kudos from the Deputy Director of Intramural Research: http://ddir.nih.gov/back18/ddir_1805.pdf
Dr. Peter Basser is awarded the Victor M. Haughton Award at the October annual meeting of the American Society of Functional Neuroradiology in Portland, OR. (NIH Record, November 17, 2017)
Dr. Ruiliang Bai received the Summa Cum Laude Merit Award at ISMRM 2017.
Dr. Ruiliang Bai received two Summa Cum Laude awards for outstanding posters at ISMRM 2016
Dr. Dan Benjamini received the 2016 Giulio Cesare Borgia Prize at MRPM13
Dr. Basser et al. was honored as the author of one of ISMRM's "30 most influential MRM papers" at ISMRM 2014 in Milan, Italy. Photos here: https://twitter.com/alex_leemans/status/466644304342306816
Drs. Peter Basser, Denis LeBihan, and Carlo Pierpaoli receive the Award for Excellence in Technology Transfer at the 2013 FLC Mid-Atlantic Regional Meeting in Leesburg, VA (page 8 in PDF).
Peter Basser, 2010 ISMRM Fellow
- NICHD’s Basser Honored for MRI Technology. (2010). NIH Record, 62(15), p.5. PDF
Dr. Basser receives the 2008 ISMRM Gold Medal
Carlo Pierpaoli, 2008 ISMRM Fellow
Outreach:
Click here for info about the NIH Conference, "Diffusion Tensor MRI: From Bench to Bedside"
IP:
Smith, C. (2002) NIH commercializes new imaging technique. Nature Medicine 8(9): 906.
NIH Backgrounder, "Diffusion Tensor Magnetic Resonance Imaging"
Software:
Grants:
USUHS Center for Neuroscience and Regenerative Medicine grant: "Development of Bench and Preclinical MRI Methods to Assess Glymphatic Clearance in the Living Brain"
US-Israel Binational Science Foundation grants
2018 Bench-to-Bedside Award, funded by Intramural Research Program (Director's Challenge Award): "Localization of Epileptogenic Foci using Diffusion Weighted MRI"
NIH BRAIN Initiative funded awards
The MRI Study of Normal Brain Development
Diffusion – Data Processing Center (DPC)
